1Neurology Unit, Internal Medicine Department, University of Calabar Teaching Hospital, Calabar, Nigeria
2Department of Neuroscience, Sheffield Institute for Translational Neuroscience (SITraN), University of Sheffield, Sheffield, UK
3Department of Elderly Medicine, North Tyneside General Hospital, Newcastle, UK
Copyright © 2018 The Korean Movement Disorder Society
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S/N | Genetic mutation studied | Method of analysis | Result(s) | Sample size | Country (Reference) |
---|---|---|---|---|---|
1 | LRRK2, PRKN, ATXN3 | Analyzed for common mutations using the Oragene kit for DNA extraction (DNA genotek) | No pathogenic mutations were found. | 51 PD patients & 51 controls | Nigeria (Okubadejo et al. [7]) |
2 | Parkin | Single-strand conformation polymorphism analysis and the HRM* technique | • Four disease-causing missense heterogeneous changes (H200Q, D280N, E310D, R4026) | 91 | South Africa (Bardien et al. [42]) |
• Two homozygous exon deletions (exon 3 & 4) | |||||
3 | LRRK2 | HRM | • LRRK2 G2019S mutation found in 2 patients | 205 | South Africa (Bardien et al. [12]) |
4 | SNCA, Parkin, PINK1, DJ-1, LRRK2, UCH-L1, ATP13A2 | MLPA† | • Exonic rearrangement in Parkin & SNCA in 7 (8%) patients | 88 | South Africa (Keyser et al. [11]) |
• No exonic rearrangement in 4 genes (LRRK2, PINK1, DJ-1, & ATP13A2) | |||||
5 | PINK1 | HRM technique & direct sequencing | • Sixteen variants found: | 154 | South Africa (Keyser et al. [11]) |
- One homozygous mutation (Y258X) | |||||
- Two heterozygous missense variants (P305A & E476K) | |||||
- Thirteen polymorphisms, of which five were novel. | |||||
6 | MAPT, SNCAIP | HRM method | • Two novel variants found for MAPT | 202 | South Africa (Keyser et al. [10]) |
• One previously sequenced variant (E709Q) and three novel missense variants of SNCAIP | |||||
7 | E1F4G1‡ (NM_182917.3) | PCR amplified & sequenced | • EIF4G1 coding variants found in the SSA population were M290I, R305C, Y311C, P382L, E477K, & R1216H. | 127 (SSA samples from the Human Diversity series) | Sample from the Central African Republic, the DR of the Congo, Kenya, Nigeria, Namibia, Senegal, and South Africa (Tucci et al. [6]) |
8 | SNCA, LRRK2, PINK1, DJ-1, Parkin | Direct sequencing | • Pathogenic mutation not detected in SNCA, PINK1 or DJ-1 | 39 | Zambia (Yonova-Doing et al. [43]) |
• Novel LRRK2 missense variant detected in one case | |||||
• Two heterozygous likely disease-causing deletions of Parkin (exon 2 & 4) detected in early-onset cases | |||||
9 | Parkin | HRM and MLPA | • Seven patients compound mutation in Parkin gene | 229 PD patients and ethically | South Africa (Haylett et al. [9]) |
• Seven patients had heterozygous sequence variants | matched controls | ||||
10 | LRRK2 | Direct sequencing | LRRK2 exon 41 & 31 screening did not detect any mutations in all samples. | 54 PD patients and 46 controls | Ghana (Cilia et al. [53]) |
11 | EIF4G1, VPS35‡ | KASP genotyping assay | No mutations found | 418 PD patients & 528 controls | South Africa (Blanckenberg et al. [3]) |
* HRM is a sequencing screening used to detect genetic variations due to processes such as mutation and polymorphisms,
† MLPA is a technique used to detect exon dosage changes caused by genomic rearrangements,
‡ E1F4GI and VPS35 are not among the well-established genetic causes of PD and have been suggested to be involved in its etiology, MLPA: multiplex ligation-dependent-probe amplification, SSA: Sub-Saharan Africa, HRM, high-resolution melt, PD: Parkinson’s disease, KASP: kompetitive Allele Specific PCR, E1F4GI: eukaryotic translation initiation factor 4GI, VPS35: vacuolar protein sorting 35.
S/N | Novel genetic variant(s)* | Gene | Country | Reference |
---|---|---|---|---|
1 | Heterozygous variant of PRKN (p.R334H and p.A46T) | PRKN | Nigeria | Okubadejo et al. [7] |
2 | H200Q in exon 5 in a patient with a family history of PD | Parkin | South Africa | Bardien et al. [42] |
E310D in one patient with PD | ||||
3 | P305A variant reported in a female patient of a black Xhosa family with a positive family history of PD. Age at onset of 30 years. | PINK1 | South Africa | Keyser et al. [11] |
4 | Two novel variants found for MAPT reported in two patients. A91V in a male of mixed ancestry, with age at onset of 32 years. V6351 in a black male with age at onset of 60 years. Both variants predicted by PolyPhen as being benign variants. | MAPT | South Africa | Keyser et al. [10] |
5 | Novel LRRK2 missense (p.Ala1464Gly) of questionable pathological significance detected in one PD patient | LRRK2 | Zambia | Yonova-Doing et al. [43] |
S/N | Country | Year | Population size studied | Percentage of population > 65 years at the time of study* | Diagnostic criteria/ study procedure | Prevalence | Reference |
---|---|---|---|---|---|---|---|
1 | Nigeria | 1982 | 20,000 rural community dwellers | 3 | WHO research protocol* | 10/100,000 | Osuntokun et al. [54] |
2 | Nigeria | 1987 | 3,412 rural community dwellers | 3 | WHO research protocol | 2/3,412 (0.1%) | Schoenberg et al. [55] |
Age-adjusted prevalence ratio = 67/100,000 | |||||||
3 | Ethiopia | 1986 to 1988 | 60,820 community dwellers | 3 | Not stated | 7/100,000 | Tekle-Haimanot et al. [56] |
4 | Togo | 1989 | 19,241 residing in two rural settings | 3 | WHO research protocol | 20/100,000 | Balogou et al. [44] |
5 | Tanzania | 2003 | 16,647 rural community | 3 | UK PD Society Brain Bank Criteria† | Diagnosis of PD not confirmed in any of the patients | Winkler et al. [31] |
6 | Tanzania | 2006 | 161,071 | 3 | UK PD Society Brain Bank Criteria | 33/100,000 | Dotchin et al. [14] |
* estimated proportion of people > 65 years at time of study was obtained from the World Bank data base records, World Bank, 2014,
† UK PD brain bank criteria require the presence of bradykinesia plus at least one of rigidity, tremor or postural instability,
‡ WHO protocol: This is a 2-stage procedure involving initial screening with a questionnaire followed by clinical examination by a specialist.
PD: Parkinson’s disease.
S/N | Country | Year* | Patient group studied | Diagnostic criteria | Hospital frequency | Reference |
---|---|---|---|---|---|---|
1 | Cameroon | 2005-2011 (6 yrs) | 912 neurological consultations in the outpatient clinic | UK PD Society Brain Bank Criteria | 2.96% of all neurology referrals | Tegueu et al. [57] |
2 | Cameroon | 1993-2001 (9 yrs) | 84 patients referred to the outpatient clinic with degenerative brain disease | Same | 48.8% of all patients referred with degenerative brain disease | Kengne et al. [58] |
3 | Ethiopia | 2003-2004 (1 yr) | 720 neurological referrals to the outpatient clinic | NS† | 7.2% of all neurological referrals to the outpatient clinic | Bower et al. [34] |
4 | Nigeria | 1996-2006 (10 yrs) | 1,360 new referrals to the outpatient neurology clinic | UK PD Society Brain Bank Criteria | 1.47% of all referrals to the clinic | Okubadejo et al. [59] |
5 | Tanzania | 2002-2006 (4 yrs) | 1,908 consecutive referrals to the outpatient neurology clinic | UK PD Society Brain Bank Criteria | 2.2% of all neurological referrals | Matuja and Aris [60] |
6 | Zambia | 1999-2004 (5 yrs) | 163 patients who visited the OPD or were admitted with extrapyramidal symptoms | NS | 31.3% of all referrals to neurology clinic or admitted to hospital with extrapyramidal symptoms | Atadzhanov and Mwaba [20] |
Item | Key finding(s) | Reference(s) |
---|---|---|
Availability of neurologist | - 0.03 neurologists per 100,000 population in SSA compared to 0.07 in South East Asia and 4.84 per 100,000 population in Europe. | - WHO [23]; WHO [1] |
- Until 2009, only one neurologist in Malawi with a population of 12 million. | - Jung et al. [24] | |
Availability of geriatricians | - Limited number of geriatricians | - Dotchin et al. [25] |
- No undergraduate & postgraduate training scheme in over 25 countries. | ||
PD Nurses | - No neurology nurses in SSA as of 2006. | - WHO [23] |
- First PD nurses training occurred in 2012. | - Walker [26]; Walker et al. [27] | |
Speech-language therapist (SLT) | - No SLT services in Burundi, Burkina Faso, Cape Verde, Gambia, Guinea, Guinea Bissau, Liberia, Mali, Niger or Sierra Leone. | - Speech-Language Therapy.COM; ASHA.org. [28] |
OT and PT | - No regional studies evaluating OT/PT. | - History of OTARG to 2012 [29] |
- Active OT services registered in Botswana, Kenya, Malawi, Mauritius, Namibia, Nigeria, Rwanda, South Africa, Tanzania, Uganda, and Zimbabwe. | - WHO [23] | |
- Only three registered occupational therapists caring for 160 million people. | - WHO [1] | |
- Neuro-rehabilitation services present in only 81.2% of countries in SSA. | ||
Availability of drugs | - In Africa, PD drugs mainly available in 12.5% of countries mostly in North Africa & South Africa compared to 79.1% in Europe. | - WHO [23] |
- Local pharmacies do not store levodopa in Tanzania. | - Winkler et al. [31] | |
- Only 250/25 mg preparation of L-dopa available in Nigeria. Ropinirole, Pramipexole and Selegiline rarely available in the country. | - Femi et al. [32] | |
- Cameroonian patients have little access to dopamine agonist. | - Cubo et al. [33] | |
- Only 59.6% of Ethiopian patients had adequate L-dopa. | - Bower et al. [34] | |
- Monoamine oxidase B inhibitors and non-ergot dopamine agonist not available in rural Tanzania. | - Dotchin et al. [35] | |
- Catechol-O-methyl transferase inhibitors were not available in any of the outlets in Kenya. | - Mokaya et al. [37] | |
Cost of PD care | - Estimated cost of PD drug for one month in Tanzania was 33 US dollars. | - Mshana et al. [38] |
- Monthly cost of 250/25 mg levodopa/carbidopa in Ethiopia was 10.49 US dollars, while the cost equivalent of an outpatient visit was approximately 0.66 US dollars. | - Bower et al. [34] | |
- In Kenya, the average cost of 100 tablets of L-dopa was between 28.2 and 82.4 US dollars with an average of 48.2 US dollars. | - Mokaya et al. [37] | |
- PD patients have the added cost burden of paying for their transportation and consultation. | - Dotchin and Walker [39] | |
Neurosurgery & Neuroradiology Services | - There are 0.01 neurosurgeons per 100,000 population in Africa compared to 1.02 in Europe and 0.39 per 100,000 population in Western pacific. | - WHO [23] |
- No neurosurgery service for PD patients in Nigeria. | - Femi et al. [32] | |
- Lack of neuroimaging service in Cameroon. | - Cubo et al. [33] | |
- Dopamine imaging facility not available in SSA. | - Dotchin and Walker [39] |
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S/N | Genetic mutation studied | Method of analysis | Result(s) | Sample size | Country (Reference) |
---|---|---|---|---|---|
1 | LRRK2, PRKN, ATXN3 | Analyzed for common mutations using the Oragene kit for DNA extraction (DNA genotek) | No pathogenic mutations were found. | 51 PD patients & 51 controls | Nigeria (Okubadejo et al. [7]) |
2 | Parkin | Single-strand conformation polymorphism analysis and the HRM |
• Four disease-causing missense heterogeneous changes (H200Q, D280N, E310D, R4026) | 91 | South Africa (Bardien et al. [42]) |
• Two homozygous exon deletions (exon 3 & 4) | |||||
3 | LRRK2 | HRM | • LRRK2 G2019S mutation found in 2 patients | 205 | South Africa (Bardien et al. [12]) |
4 | SNCA, Parkin, PINK1, DJ-1, LRRK2, UCH-L1, ATP13A2 | MLPA |
• Exonic rearrangement in Parkin & SNCA in 7 (8%) patients | 88 | South Africa (Keyser et al. [11]) |
• No exonic rearrangement in 4 genes (LRRK2, PINK1, DJ-1, & ATP13A2) | |||||
5 | PINK1 | HRM technique & direct sequencing | • Sixteen variants found: | 154 | South Africa (Keyser et al. [11]) |
- One homozygous mutation (Y258X) | |||||
- Two heterozygous missense variants (P305A & E476K) | |||||
- Thirteen polymorphisms, of which five were novel. | |||||
6 | MAPT, SNCAIP | HRM method | • Two novel variants found for MAPT | 202 | South Africa (Keyser et al. [10]) |
• One previously sequenced variant (E709Q) and three novel missense variants of SNCAIP | |||||
7 | E1F4G1 |
PCR amplified & sequenced | • EIF4G1 coding variants found in the SSA population were M290I, R305C, Y311C, P382L, E477K, & R1216H. | 127 (SSA samples from the Human Diversity series) | Sample from the Central African Republic, the DR of the Congo, Kenya, Nigeria, Namibia, Senegal, and South Africa (Tucci et al. [6]) |
8 | SNCA, LRRK2, PINK1, DJ-1, Parkin | Direct sequencing | • Pathogenic mutation not detected in SNCA, PINK1 or DJ-1 | 39 | Zambia (Yonova-Doing et al. [43]) |
• Novel LRRK2 missense variant detected in one case | |||||
• Two heterozygous likely disease-causing deletions of Parkin (exon 2 & 4) detected in early-onset cases | |||||
9 | Parkin | HRM and MLPA | • Seven patients compound mutation in Parkin gene | 229 PD patients and ethically | South Africa (Haylett et al. [9]) |
• Seven patients had heterozygous sequence variants | matched controls | ||||
10 | LRRK2 | Direct sequencing | LRRK2 exon 41 & 31 screening did not detect any mutations in all samples. | 54 PD patients and 46 controls | Ghana (Cilia et al. [53]) |
11 | EIF4G1, VPS35 |
KASP genotyping assay | No mutations found | 418 PD patients & 528 controls | South Africa (Blanckenberg et al. [3]) |
S/N | Novel genetic variant(s) |
Gene | Country | Reference |
---|---|---|---|---|
1 | Heterozygous variant of PRKN (p.R334H and p.A46T) | PRKN | Nigeria | Okubadejo et al. [7] |
2 | H200Q in exon 5 in a patient with a family history of PD | Parkin | South Africa | Bardien et al. [42] |
E310D in one patient with PD | ||||
3 | P305A variant reported in a female patient of a black Xhosa family with a positive family history of PD. Age at onset of 30 years. | PINK1 | South Africa | Keyser et al. [11] |
4 | Two novel variants found for MAPT reported in two patients. A91V in a male of mixed ancestry, with age at onset of 32 years. V6351 in a black male with age at onset of 60 years. Both variants predicted by PolyPhen as being benign variants. | MAPT | South Africa | Keyser et al. [10] |
5 | Novel LRRK2 missense (p.Ala1464Gly) of questionable pathological significance detected in one PD patient | LRRK2 | Zambia | Yonova-Doing et al. [43] |
S/N | Country | Year | Population size studied | Percentage of population > 65 years at the time of study |
Diagnostic criteria/ study procedure | Prevalence | Reference |
---|---|---|---|---|---|---|---|
1 | Nigeria | 1982 | 20,000 rural community dwellers | 3 | WHO research protocol |
10/100,000 | Osuntokun et al. [54] |
2 | Nigeria | 1987 | 3,412 rural community dwellers | 3 | WHO research protocol | 2/3,412 (0.1%) | Schoenberg et al. [55] |
Age-adjusted prevalence ratio = 67/100,000 | |||||||
3 | Ethiopia | 1986 to 1988 | 60,820 community dwellers | 3 | Not stated | 7/100,000 | Tekle-Haimanot et al. [56] |
4 | Togo | 1989 | 19,241 residing in two rural settings | 3 | WHO research protocol | 20/100,000 | Balogou et al. [44] |
5 | Tanzania | 2003 | 16,647 rural community | 3 | UK PD Society Brain Bank Criteria |
Diagnosis of PD not confirmed in any of the patients | Winkler et al. [31] |
6 | Tanzania | 2006 | 161,071 | 3 | UK PD Society Brain Bank Criteria | 33/100,000 | Dotchin et al. [14] |
S/N | Country | Year |
Patient group studied | Diagnostic criteria | Hospital frequency | Reference |
---|---|---|---|---|---|---|
1 | Cameroon | 2005-2011 (6 yrs) | 912 neurological consultations in the outpatient clinic | UK PD Society Brain Bank Criteria | 2.96% of all neurology referrals | Tegueu et al. [57] |
2 | Cameroon | 1993-2001 (9 yrs) | 84 patients referred to the outpatient clinic with degenerative brain disease | Same | 48.8% of all patients referred with degenerative brain disease | Kengne et al. [58] |
3 | Ethiopia | 2003-2004 (1 yr) | 720 neurological referrals to the outpatient clinic | NS |
7.2% of all neurological referrals to the outpatient clinic | Bower et al. [34] |
4 | Nigeria | 1996-2006 (10 yrs) | 1,360 new referrals to the outpatient neurology clinic | UK PD Society Brain Bank Criteria | 1.47% of all referrals to the clinic | Okubadejo et al. [59] |
5 | Tanzania | 2002-2006 (4 yrs) | 1,908 consecutive referrals to the outpatient neurology clinic | UK PD Society Brain Bank Criteria | 2.2% of all neurological referrals | Matuja and Aris [60] |
6 | Zambia | 1999-2004 (5 yrs) | 163 patients who visited the OPD or were admitted with extrapyramidal symptoms | NS | 31.3% of all referrals to neurology clinic or admitted to hospital with extrapyramidal symptoms | Atadzhanov and Mwaba [20] |
Item | Key finding(s) | Reference(s) |
---|---|---|
Availability of neurologist | - 0.03 neurologists per 100,000 population in SSA compared to 0.07 in South East Asia and 4.84 per 100,000 population in Europe. | - WHO [23]; WHO [1] |
- Until 2009, only one neurologist in Malawi with a population of 12 million. | - Jung et al. [24] | |
Availability of geriatricians | - Limited number of geriatricians | - Dotchin et al. [25] |
- No undergraduate & postgraduate training scheme in over 25 countries. | ||
PD Nurses | - No neurology nurses in SSA as of 2006. | - WHO [23] |
- First PD nurses training occurred in 2012. | - Walker [26]; Walker et al. [27] | |
Speech-language therapist (SLT) | - No SLT services in Burundi, Burkina Faso, Cape Verde, Gambia, Guinea, Guinea Bissau, Liberia, Mali, Niger or Sierra Leone. | - Speech-Language Therapy.COM; ASHA.org. [28] |
OT and PT | - No regional studies evaluating OT/PT. | - History of OTARG to 2012 [29] |
- Active OT services registered in Botswana, Kenya, Malawi, Mauritius, Namibia, Nigeria, Rwanda, South Africa, Tanzania, Uganda, and Zimbabwe. | - WHO [23] | |
- Only three registered occupational therapists caring for 160 million people. | - WHO [1] | |
- Neuro-rehabilitation services present in only 81.2% of countries in SSA. | ||
Availability of drugs | - In Africa, PD drugs mainly available in 12.5% of countries mostly in North Africa & South Africa compared to 79.1% in Europe. | - WHO [23] |
- Local pharmacies do not store levodopa in Tanzania. | - Winkler et al. [31] | |
- Only 250/25 mg preparation of L-dopa available in Nigeria. Ropinirole, Pramipexole and Selegiline rarely available in the country. | - Femi et al. [32] | |
- Cameroonian patients have little access to dopamine agonist. | - Cubo et al. [33] | |
- Only 59.6% of Ethiopian patients had adequate L-dopa. | - Bower et al. [34] | |
- Monoamine oxidase B inhibitors and non-ergot dopamine agonist not available in rural Tanzania. | - Dotchin et al. [35] | |
- Catechol-O-methyl transferase inhibitors were not available in any of the outlets in Kenya. | - Mokaya et al. [37] | |
Cost of PD care | - Estimated cost of PD drug for one month in Tanzania was 33 US dollars. | - Mshana et al. [38] |
- Monthly cost of 250/25 mg levodopa/carbidopa in Ethiopia was 10.49 US dollars, while the cost equivalent of an outpatient visit was approximately 0.66 US dollars. | - Bower et al. [34] | |
- In Kenya, the average cost of 100 tablets of L-dopa was between 28.2 and 82.4 US dollars with an average of 48.2 US dollars. | - Mokaya et al. [37] | |
- PD patients have the added cost burden of paying for their transportation and consultation. | - Dotchin and Walker [39] | |
Neurosurgery & Neuroradiology Services | - There are 0.01 neurosurgeons per 100,000 population in Africa compared to 1.02 in Europe and 0.39 per 100,000 population in Western pacific. | - WHO [23] |
- No neurosurgery service for PD patients in Nigeria. | - Femi et al. [32] | |
- Lack of neuroimaging service in Cameroon. | - Cubo et al. [33] | |
- Dopamine imaging facility not available in SSA. | - Dotchin and Walker [39] |
HRM is a sequencing screening used to detect genetic variations due to processes such as mutation and polymorphisms, MLPA is a technique used to detect exon dosage changes caused by genomic rearrangements, E1F4GI and VPS35 are not among the well-established genetic causes of PD and have been suggested to be involved in its etiology, MLPA: multiplex ligation-dependent-probe amplification, SSA: Sub-Saharan Africa, HRM, high-resolution melt, PD: Parkinson’s disease, KASP: kompetitive Allele Specific PCR, E1F4GI: eukaryotic translation initiation factor 4GI, VPS35: vacuolar protein sorting 35.
novel variants-potential disease-causing mutations found in PD patients but not in controls. PD: Parkinson’s disease.
estimated proportion of people > 65 years at time of study was obtained from the World Bank data base records, World Bank, 2014, UK PD brain bank criteria require the presence of bradykinesia plus at least one of rigidity, tremor or postural instability, WHO protocol: This is a 2-stage procedure involving initial screening with a questionnaire followed by clinical examination by a specialist. PD: Parkinson’s disease.
the duration of review varies between the different studies from 1 year to 10 years, NS indicates that the diagnostic criteria were not clearly stated in the study concerned. PD: Parkinson’s disease.
PD: Parkinson’s disease, SSA: Sub-Saharan Africa, OT: occupational therapy, PT: physiotherapy.