Scheperjans et al. (2015) [126] |
V1, V2, V3 |
72/72 |
α↔︎/β dif |
Lactobacillaceae (F), Verrucomicrobiaceae (F), Bradyrhizobiaceae (F), Clostridiales (F), Incertae Sedis IV (F) |
Prevotellaceae (F) |
Keshavarzian et al. (2015) [121] |
V4 |
38/34 |
α↑/β dif |
Bacteroidetes (P), Proteobacteria (P), Verrucomicrobia (P), Clostridiaceae (F), Oscillospira (G), Akkermansia (G) |
Firmicutes (P), Lachnospiraceae (F), Coprobacillaceae (F), Blautia (G), Coprococcus (G), Dorea (G), Roseburia (G) |
Hasegawa et al. (2015) [117] |
Quantitative RT-PCR |
52/36 |
- |
Lactobacillus (G) |
Species: Clostridium coccoides group, Clostridium leptum subgroup, Bacteroides fragilis group |
Unger et al. (2016) [128] |
Quantitative RT-PCR |
34/34 |
- |
Enterobacteriaceae (F), Bifidobacterium (G) |
Bacteroidetes (P), Prevotellaceae (F, descriptively reduced), Lactobacillaceae (F), Enterococcaceae, Species: Faecalibacterium prausnitzii |
Petrov et al. (2017) [124] |
V3, V4 |
89/66 |
α↓/β dif |
Christensenella (G), Catabacter (G), Lactobacillus (G), Oscillospira (G), Bifidobacterium (G) |
Dorea (G), Bacteroides (G), Prevotella (G), Faecalibacterium (G) |
Bedarf et al. (2017) [116] |
Metagenomic shotgun analysis |
31/28 |
α↔︎/β dif |
Verrucomicrobiaceae (F), Firmicutes (F), Akkermansia (G) |
Prevotellaceae (F), Erysipelotrichaceae (F), Prevotella (G), Eubacterium (G) |
Hill-Burns et al. (2017) [119] |
N.A. |
197/130 |
α↔︎/β dif |
Bifidobacteriaceae (F), Lactobacillaceae (F), Tissierellaceae (F), Christensenellaceae (F), Verrucomicrobiaceae (F), Bifidobacterium (G), Lactobacillus (G), Akkermansia (G) |
Lachnospiraceae (F), Pasteurellaceae (F), Blautia (G), Roseburia (G), Faecalibacterium (G) |
Li et al. (2017) [122] |
V3, V4, V5 |
24/14 |
α↓/β dif |
Actinobacteria (P), Proteobacteria (P), Enterobacteriaceae (F), Streptococcaceae (F), Veillonellaceae (F), Acidaminococcus (G), Acinetobacter (G), Enterococcus (G), Escherichia-Shigella (G), Megamonus (G), Megasphaera (G), Proteus (G), Streptococcus (G) |
Bacteroidetes (P), Pasteurellaceae (F), Blautia (G), Faecalibacterium (G), Ruminococcus (G) |
Hopfner et al. (2017) [120] |
V1, V2 |
29/29 |
α↔︎/β dif |
Barnesiellaceae (F), Enterococcaceae (F), Lactobacillaceae (F) |
- |
Qian et al. (2018) [125] |
V3, V4 |
45/45 |
α↑/β dif |
Clostridium IV (G), Aquabacterium (G), Holdemania (G), Sphingomonas (G), Clostridium XVIII (G), Butyricicoccus (G), Anaerotruncus (G) |
- |
Lin et al. (2018) [123] |
V4 |
75/45 |
α↔︎/β dif |
Eubacteriaceae (F), Bifidobacteriaceae (F), Aerococcaceae (F), Desulfovibrionaceae (F) (see footnote for genera composition) |
Tenericutes (P), Euryarchaeota (P), Firmicutes (P), Streptococcaceae (F), Methylobacteriaceae (F), Comamonadaceae (F), Halomonadaceae (F), Hyphomonadaceae (F), Brucellaceae (F), Xanthomonadaceae (F), Lachnospiraceae (F), Actinomycetaceae (F), Sphingomonadaceae (F), Pasteurellaceae (F), Micrococcaceae (F), Intrasporangiaceae (F), Methanobacteriaceae (F), Idiomarinaceae (F), Brevibacteriaceae (F), Gemellaceae (F) (see footnote for genera composition) |
Heintz-Buschart et al. (2018) [118] |
V4 |
76/78 (21 iRBD) |
α↔︎/β dif |
Verrucomicrobia (P), Verrucomicrobiales (O), Verrucomicrobiaceae (F), Akkermansia (G) |
- |
Tan et al. (2018) [127] |
V3, V4 |
104/96 |
α↔︎/β dif |
- |
Bacteroides (G), Parasutterella (G), Collinsella (G), Escherichia/Shigella (G), Prevotella (G), Bifidobacterium (G) |